聖塔非研究所

摘要 Archaeal 基因組s are densely packed; thus, correct t

2020-02-10 · 已發表論文 · 更新 2026/08/30 下午12:48

摘要 Archaeal 基因組s are densely packed; thus, correct transcription termination is an important factor for orchestrated gene expression. A systematic analysis of RNA 3 ' termini, to identify tr…

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  • 類型:已發表論文
  • 日期:2020-02-10

摘要

Archaeal 基因組s are densely packed; thus, correct transcription termination is an important factor for orchestrated gene expression. A systematic analysis of RNA 3 ' termini, to identify transcription termination sites (TTS) using RNAseq data has hitherto only been performed in two archaea, Methanosarcina mazei and Sulfolobus acidocaldarius. In this study, only regions directly downstream of annotated genes were analysed, and thus, only part of the 基因組 had been investigated. Here, we developed a novel algorithm (Internal Enrichment-Peak Calling) that allows an unbiased, 基因組-wide identification of RNA 3 ' termini independent of annotation. In an RNA fraction enriched for primary transcripts by terminator exonuclease (TEX) treatment we identified 1,543 RNA 3 ' termini. Approximately half of th

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