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原文連結
論文資訊
- 類型：已發表論文
- 日期：2022-08-07
摘要
AsymmeTree is a flexible and easy-to-use Python package for the simulation of gene family histories. It simulates 物種 trees and considers the joint action of gene duplication, loss, conversion, and horizontal transfer to evolve gene families along the 物種 tree. To generate realistic scenarios, 演化 rate heterogeneity from various sources is modeled. Finally, nucleotide or amino acid sequences (optionally with indels, among-site rate heterogeneity, and invariant sites) can be simulated along the gene phylogenies. For all steps, users can choose from a spectrum of alternative methods and parameters. These choices include most options that are commonly used in comparable tools but also some that are usually not found, such as the innovation model for 物種 演化. While output files for each individual
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